Rename plotting routing and bugfix for timing

app/plot_sst/file/plot_var.py → app/plot_surf_vars/file/plot_var.py

@@ -48,6 +48,7 @@ fname = sys.argv[1]
 var = sys.argv[2]
 clim = [float(sys.argv[3]), float(sys.argv[4])]
 
+print(fname)
 
 cmap = pt.plotting.pmlcmaps(var)
 pool_size = 4

app/plot_sst/rose-app.conf → app/plot_surf_vars/rose-app.conf

 [command]
-default = today_output=/${ARCHIVE_DIR}/${START_DAY}/${GRID}_0001.nc;
+default = today_output=/${ARCHIVE_DIR}/${START_DAY}/${GRID_NAME}_0001.nc; echo ${today_output}
 		python3 plot_var.py ${today_output} temp 8 18; python3 plot_var.py ${today_output} salinity 31 36;
-		mkdir /${PLOT_DIR}/${START_DAY}/; mv *.png /${PLOT_DIR}/${START_DAY}/
+		mkdir -p /${PLOT_DIR}/${START_DAY}/; mv *.png /${PLOT_DIR}/${START_DAY}/

suite.rc

@@ -67,7 +67,8 @@
 {% else %}
 					write_run_namelist => run_fvcom => transfer_data
 {% endif %}
-					run_fvcom => nan_check & plot_sst
+					run_fvcom => nan_check 
+					transfer_data => plot_surf_vars
 
 
 					"""
@@ -303,4 +304,4 @@
 			"""
 	[[nan_check]]
 		inherit = remote_job
-	[[plot_sst]]	
+	[[plot_surf_vars]]