suite.rc 7.46 KB
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#!jinja2
[cylc]
	UTC mode = True # Ignore DST
	abort if any task fails = False

[scheduling]
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	initial cycle point = {{INITIAL_START_DATE}}
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{% if FINAL_CYCLE_POINT != 'NONE' %}
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        final cycle point = {{FINAL_CYCLE_POINT}}
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{% endif %}
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	[[special tasks]]
		clock-trigger = start_cycle(PT0M)
	[[dependencies]]
		[[[R1]]]
			graph = """
					copy_common_to_remote => softlink_forcing_remote
					write_run_namelist => hot_cold_start => run_fvcom
					"""
		[[[P1D]]]
			graph = """
					run_fvcom[-P1D] =>  start_cycle => softlink_forcing  & softlink_forcing_remote => write_run_namelist

{% if FORECAST and (WIND_ON == 'T' or HEATING_ON == 'T' or PRECIPITATION_ON == 'T' or AIR_PRESSURE_ON == 'T') %}
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				start_cycle => wrf_suite_trigger <wrf::transfer_for_fvcom> => get_wrf_file => write_run_namelist
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{% endif %}

{% if BOUNDARY_FORCING == 'TIDAL' %}
					start_cycle => generate_tide_forcing => write_run_namelist
{% elif BOUNDARY_FORCING == 'CMEMS' %}
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					start_cycle => CMEMS_download_trigger <download::get_CMEMS_data:finish> => generate_CMEMS_nest => copy_CMEMS_nest_to_remote => write_run_namelist
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{% elif BOUNDARY_FORCING == 'NEST_FILE' %}
					start_cycle => nest_suite_trigger<{{NEST_RUN_SUITE}}::transfer_data> => get_nest_file => write_run_namelist
{% endif %}

{% if RIVER_MODEL == 'NEURAL_NET' %}
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					start_cycle => wrf_archive_trigger <wrf::cycle_finished> & update_river_model & softlink_forcing => generate_rivers 
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					generate_rivers:failed => trigger_archive_wrf & write_empty_river_nml
					generate_rivers:succeeded => !trigger_archive_wrf & !write_empty_river_nml
					generate_rivers:succeeded | write_empty_river_nml => mv_river_files => write_river_number

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					write_run_namelist => write_river_number => run_fvcom
{% elif RIVER_MODEL == 'CLIMATOLOGY' %}
					start_cycle => get_river_files => write_run_namelist => write_river_number => run_fvcom
{% endif %}

{%- if SEDIMENT %}
					write_cstms_namelist => run_fvcom
{%- endif %}

					write_run_namelist => run_fvcom => transfer_data
					"""
		[[[+P1D/P1D]]]
			graph = """
					run_fvcom[-P1D] => transfer_restart => run_fvcom
					"""

[runtime]
	[[root]]
		env-script = eval $(rose task-env --cycle-offset=P1D)
		script = rose task-run --verbose
		[[[job]]]
			execution time limit = PT3H
		[[[events]]]
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			mail events = submission timeout, execution timeout, failed
			mail to = {{MAIL_TO}}
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			submission timeout = P1D
		[[[environment]]]
			START_DATE=$(rose date --print-format='%Y-%m-%d %H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			END_DATE=$(rose date --offset=P1D --print-format='%Y-%m-%d %H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			START_DATE_STR=$(rose date --print-format='%Y-%m-%d_%H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			END_DATE_STR=$(rose date --offset=P1D --print-format='%Y-%m-%d_%H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			START_DAY=$(rose date --print-format='%Y-%m-%d' $CYLC_TASK_CYCLE_POINT)
			END_DAY=$(rose date --offset=P1D --print-format='%Y-%m-%d' $CYLC_TASK_CYCLE_POINT)

			GRID_NAME={{GRID_NAME}}
			RIVER_MODEL_PATH={{RIVER_MODEL_PATH}}
			REMOTE_TRANSFER_DIR={{REMOTE_TRANSFER_DIR}}
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			ARCHIVE_DIR={{ARCHIVE_DIR}}
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			HARMONICS_FILE_PATH={{HARMONICS_FILE_PATH}}
			CMEMS_DATA_DIR={{CMEMS_DATA_DIR}}
			NEST_RUN_SUITE={{NEST_RUN_SUITE}}
			NEST_INTERVAL={{NEST_INTERVAL}}

			EXT_TSTEP={{EXT_TSTEP}}
			ISPLIT={{ISPLIT}}
			STARTUP_DMAX={{STARTUP_DMAX}}
			HORIZONTAL_MIXING_COEFFICIENT={{HORIZONTAL_MIXING_COEFFICIENT}}
			VERTICAL_MIXING_COEFFICIENT={{VERTICAL_MIXING_COEFFICIENT}}
			COORDINATES={{COORDINATES}}
			WIND_ON={{WIND_ON}}
			HEATING_ON={{HEATING_ON}}
			PRECIPITATION_ON={{PRECIPITATION_ON}}
			AIR_PRESSURE_ON={{AIR_PRESSURE_ON}}

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			TEMP_ACTIVE={{TEMP_ACTIVE}}
			SALT_ACTIVE={{SALT_ACTIVE}}

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			WRF_FORECAST_FILE_DIR={{WRF_FORECAST_FILE_DIR}}
			WRF_ARCHIVE_DIR={{WRF_ARCHIVE_DIR}}
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			COMMON_FILES_PATH={{COMMON_FILES_PATH}}
{%- if BOUNDARY_FORCING == 'TIDAL' %}
			ELEV_FORCE='T'
{%- else %}
			ELEV_FORCE='F'
{%- endif %}

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{%- if BOUNDARY_FORCING in ['CMEMS', 'NEST_FILE'] %}
                        NEST_ON='T'
			NEST_TYPE='3'
{%- else %}
                        NEST_ON='T'
			NEST_TYPE='3'
{%- endif %}


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	[[slurm_job]]
		[[[job]]]
			batch system = slurm
			submission polling intervals = PT10S
			execution polling intervals = PT10S, PT1M
		[[[directives]]]
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			--nodes = {{MIN_NODES}}-{{MAX_NODES}}
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			--ntasks-per-node=20
			--threads-per-core=1
			--time=24:00:00
{%- if USE_CETO %}
		[[[remote]]]
			host = login.ceto.npm.ac.uk
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			owner = {{REMOTE_USER}}
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{%- endif %}
	[[slurm_job_1]]
		inherit = slurm_job
		[[[directives]]]
			--nodes = 1
			--ntasks-per-node = 1
			--threads-per-core=1
			--time=24:00:00
	[[remote_job]]
{%- if USE_CETO %}
		[[[remote]]]
			host = login.ceto.npm.ac.uk
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			owner = {{REMOTE_USER}}
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{%- endif %}


	[[write_run_namelist]]
		inherit = slurm_job_1
{%- if SEDIMENT %}
	[[write_run_cstms]]
{%- endif %}

	[[copy_common_to_remote]]
		inherit = remote_job
    [[softlink_forcing]]
    [[softlink_forcing_remote]]
        inherit = slurm_job_1
	
	[[wrf_suite_trigger]]
		script =""
		[[[suite state polling]]]
			interval = PT1M
			max-polls = 1440
		[[[job]]]
			execution retry delays = 3*PT15M
	[[get_wrf_file]]
		inherit = slurm_job_1


	[[generate_tide_forcing]]
		inherit = slurm_job_1
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    	[[CMEMS_download_trigger]]
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        script =""
        [[[suite state polling]]]
            interval = PT1M
            max-polls = 1440
        [[[job]]]
            execution retry delays = 3*PT15M
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	[[generate_CMEMS_nest]]
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	[[copy_CMEMS_nest_to_remote]]
		inherit = remote_job
		script = "cp /pml${REMOTE_TRANSFER_DIR}/boundary_nest.nc ${ROSE_DATAC}/${GRID_NAME}_nest_0001.nc"

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	[[nest_suite_trigger]]
		script =""
		[[[suite state polling]]]
			interval = PT1M
			max-polls = 1440
	[[get_nest_file]]
		inherit = slurm_job_1

	[[wrf_archive_trigger]]
		script =""
		[[[suite state polling]]]
			interval = PT1M
			max-polls = 1440
		[[[job]]]
			execution retry delays = 3*PT15M
	[[update_river_model]]
	[[generate_rivers]]
	[[get_river_files]]
		inherit = slurm_job_1
	[[mv_river_files]]
		inherit = remote_job
	[[write_river_number]]
		inherit = slurm_job_1
		script = """
				NO_RIVERS=$(grep "&NML_RIVER" ${ROSE_DATAC}/${GRID_NAME}_riv.nml | wc -l);
				sed -i "s|.*RIVER_NUMBER.*| RIVER_NUMBER  = ${NO_RIVERS},|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
				"""
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	[[trigger_archive_wrf]]
                script = """
                        echo "Get the dates missing from the river model and pass to the wrf archive run" 
                        """

	[[write_empty_river_nml]]
		script = """
			echo "Make a fake riv.nml and copy to run directory" 
			"""
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	[[run_fvcom]]
		inherit = slurm_job
	[[hot_cold_start]]
		inherit = remote_job
{%- if COLD_START %}
		script = """
			sed -i "s|.*STARTUP_TYPE.*|STARTUP_TYPE = 'coldstart',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_FILE.*|STARTUP_FILE = 'none',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_UV_TYPE.*|STARTUP_UV_TYPE   = 'default',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_TURB_TYPE.*|STARTUP_TURB_TYPE = 'default',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_TS_TYPE.*|STARTUP_TS_TYPE   = 'constant',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
	{%- if SEDIMENT %}
			sed -i "s|.*SED_HOT_START.*|SED_HOT_START = F|" ${ROSE_DATAC}/cstms_sediment.inp
	{%- endif %}
			"""
{%- endif %}
	[[transfer_data]]
		inherit = slurm_job_1
	[[start_cycle]]
		script = """
			echo "starting forecast cycle"
			"""
	[[transfer_restart]]
		inherit = slurm_job
		script = """
			ln -s ${ROSE_DATACP1D}/output/${GRID_NAME}_restart_0001.nc ${ROSE_DATAC}/${GRID_NAME}_restart_0001.nc
			"""