suite.rc 8.18 KB
Newer Older
1 2 3 4 5 6
#!jinja2
[cylc]
	UTC mode = True # Ignore DST
	abort if any task fails = False

[scheduling]
7
	initial cycle point = {{INITIAL_START_DATE}}
8
{% if FINAL_CYCLE_POINT != 'NONE' %}
9
        final cycle point = {{FINAL_CYCLE_POINT}}
10
{% endif %}
11 12 13 14 15 16 17 18 19 20 21 22 23
	[[special tasks]]
		clock-trigger = start_cycle(PT0M)
	[[dependencies]]
		[[[R1]]]
			graph = """
					copy_common_to_remote => softlink_forcing_remote
					write_run_namelist => hot_cold_start => run_fvcom
					"""
		[[[P1D]]]
			graph = """
					run_fvcom[-P1D] =>  start_cycle => softlink_forcing  & softlink_forcing_remote => write_run_namelist

{% if FORECAST and (WIND_ON == 'T' or HEATING_ON == 'T' or PRECIPITATION_ON == 'T' or AIR_PRESSURE_ON == 'T') %}
24 25 26
					start_cycle => wrf_suite_trigger <wrf::transfer_for_fvcom> => get_wrf_file => write_run_namelist
{% elif WIND_ON == 'T' or HEATING_ON == 'T' or PRECIPITATION_ON == 'T' or AIR_PRESSURE_ON == 'T' %}
					start_cycle => get_archive_wrf_file => convert_wrf_file => write_run_namelist
27 28 29 30 31
{% endif %}

{% if BOUNDARY_FORCING == 'TIDAL' %}
					start_cycle => generate_tide_forcing => write_run_namelist
{% elif BOUNDARY_FORCING == 'CMEMS' %}
32
					start_cycle => CMEMS_download_trigger <download::get_CMEMS_data:finish> => generate_CMEMS_nest => copy_CMEMS_nest_to_remote => write_run_namelist
33 34 35 36
{% elif BOUNDARY_FORCING == 'NEST_FILE' %}
					start_cycle => nest_suite_trigger<{{NEST_RUN_SUITE}}::transfer_data> => get_nest_file => write_run_namelist
{% endif %}

37
{% if RIVER_MODEL == 'NEURAL_NET' and FORECAST %}
Mike Bedington's avatar
Mike Bedington committed
38
					start_cycle => wrf_archive_trigger <wrf::cycle_finished> & update_river_model & softlink_forcing => generate_rivers 
39 40 41 42 43

					generate_rivers:failed => trigger_archive_wrf & write_empty_river_nml
					generate_rivers:succeeded => !trigger_archive_wrf & !write_empty_river_nml
					generate_rivers:succeeded | write_empty_river_nml => mv_river_files => write_river_number

44
					write_run_namelist => write_river_number => run_fvcom
45 46 47
{% elif RIVER_MODEL == 'NEURAL_NET' %}
					softlink_forcing => generate_rivers => mv_river_files
					mv_river_files & write_run_namelist => write_river_number => run_fvcom
48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69
{% elif RIVER_MODEL == 'CLIMATOLOGY' %}
					start_cycle => get_river_files => write_run_namelist => write_river_number => run_fvcom
{% endif %}

{%- if SEDIMENT %}
					write_cstms_namelist => run_fvcom
{%- endif %}

					write_run_namelist => run_fvcom => transfer_data
					"""
		[[[+P1D/P1D]]]
			graph = """
					run_fvcom[-P1D] => transfer_restart => run_fvcom
					"""

[runtime]
	[[root]]
		env-script = eval $(rose task-env --cycle-offset=P1D)
		script = rose task-run --verbose
		[[[job]]]
			execution time limit = PT3H
		[[[events]]]
70 71
			mail events = submission timeout, execution timeout, failed
			mail to = {{MAIL_TO}}
72 73 74 75 76 77 78 79 80 81 82 83
			submission timeout = P1D
		[[[environment]]]
			START_DATE=$(rose date --print-format='%Y-%m-%d %H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			END_DATE=$(rose date --offset=P1D --print-format='%Y-%m-%d %H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			START_DATE_STR=$(rose date --print-format='%Y-%m-%d_%H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			END_DATE_STR=$(rose date --offset=P1D --print-format='%Y-%m-%d_%H:%M:%S' $CYLC_TASK_CYCLE_POINT)
			START_DAY=$(rose date --print-format='%Y-%m-%d' $CYLC_TASK_CYCLE_POINT)
			END_DAY=$(rose date --offset=P1D --print-format='%Y-%m-%d' $CYLC_TASK_CYCLE_POINT)

			GRID_NAME={{GRID_NAME}}
			RIVER_MODEL_PATH={{RIVER_MODEL_PATH}}
			REMOTE_TRANSFER_DIR={{REMOTE_TRANSFER_DIR}}
84
			ARCHIVE_DIR={{ARCHIVE_DIR}}
85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101

			HARMONICS_FILE_PATH={{HARMONICS_FILE_PATH}}
			CMEMS_DATA_DIR={{CMEMS_DATA_DIR}}
			NEST_RUN_SUITE={{NEST_RUN_SUITE}}
			NEST_INTERVAL={{NEST_INTERVAL}}

			EXT_TSTEP={{EXT_TSTEP}}
			ISPLIT={{ISPLIT}}
			STARTUP_DMAX={{STARTUP_DMAX}}
			HORIZONTAL_MIXING_COEFFICIENT={{HORIZONTAL_MIXING_COEFFICIENT}}
			VERTICAL_MIXING_COEFFICIENT={{VERTICAL_MIXING_COEFFICIENT}}
			COORDINATES={{COORDINATES}}
			WIND_ON={{WIND_ON}}
			HEATING_ON={{HEATING_ON}}
			PRECIPITATION_ON={{PRECIPITATION_ON}}
			AIR_PRESSURE_ON={{AIR_PRESSURE_ON}}

102 103 104
			TEMP_ACTIVE={{TEMP_ACTIVE}}
			SALT_ACTIVE={{SALT_ACTIVE}}

105 106
			WRF_FORECAST_FILE_DIR={{WRF_FORECAST_FILE_DIR}}
			WRF_ARCHIVE_DIR={{WRF_ARCHIVE_DIR}}
107
			COMMON_FILES_PATH={{COMMON_FILES_PATH}}
108 109 110 111 112 113 114 115 116
                        WRF_ARCHIVE_DATESTR=$(rose date --print-format={{WRF_ARCHIVE_DATEFMT}} $CYLC_TASK_CYCLE_POINT)

{% if FORECAST %}
                        TODAY_WRF_FILE=/{{WRF_ARCHIVE_DIR}}/today/today_wrfout.nc
{% else %}
			TODAY_WRF_FILE='hindcast'
{% endif %}


117 118 119 120 121 122
{%- if BOUNDARY_FORCING == 'TIDAL' %}
			ELEV_FORCE='T'
{%- else %}
			ELEV_FORCE='F'
{%- endif %}

123 124 125 126 127 128 129 130 131 132

{%- if BOUNDARY_FORCING in ['CMEMS', 'NEST_FILE'] %}
                        NEST_ON='T'
			NEST_TYPE='3'
{%- else %}
                        NEST_ON='T'
			NEST_TYPE='3'
{%- endif %}


133 134 135 136 137 138
	[[slurm_job]]
		[[[job]]]
			batch system = slurm
			submission polling intervals = PT10S
			execution polling intervals = PT10S, PT1M
		[[[directives]]]
Mike Bedington's avatar
Mike Bedington committed
139
			--nodes = {{MIN_NODES}}-{{MAX_NODES}}
140 141 142 143 144 145
			--ntasks-per-node=20
			--threads-per-core=1
			--time=24:00:00
{%- if USE_CETO %}
		[[[remote]]]
			host = login.ceto.npm.ac.uk
146
			owner = {{REMOTE_USER}}
147 148 149 150 151 152 153 154 155 156 157 158
{%- endif %}
	[[slurm_job_1]]
		inherit = slurm_job
		[[[directives]]]
			--nodes = 1
			--ntasks-per-node = 1
			--threads-per-core=1
			--time=24:00:00
	[[remote_job]]
{%- if USE_CETO %}
		[[[remote]]]
			host = login.ceto.npm.ac.uk
159
			owner = {{REMOTE_USER}}
160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187
{%- endif %}


	[[write_run_namelist]]
		inherit = slurm_job_1
{%- if SEDIMENT %}
	[[write_run_cstms]]
{%- endif %}

	[[copy_common_to_remote]]
		inherit = remote_job
    [[softlink_forcing]]
    [[softlink_forcing_remote]]
        inherit = slurm_job_1
	
	[[wrf_suite_trigger]]
		script =""
		[[[suite state polling]]]
			interval = PT1M
			max-polls = 1440
		[[[job]]]
			execution retry delays = 3*PT15M
	[[get_wrf_file]]
		inherit = slurm_job_1


	[[generate_tide_forcing]]
		inherit = slurm_job_1
188
    	[[CMEMS_download_trigger]]
189 190 191 192 193 194
        script =""
        [[[suite state polling]]]
            interval = PT1M
            max-polls = 1440
        [[[job]]]
            execution retry delays = 3*PT15M
195
	[[generate_CMEMS_nest]]
Mike Bedington's avatar
Mike Bedington committed
196 197 198 199
	[[copy_CMEMS_nest_to_remote]]
		inherit = remote_job
		script = "cp /pml${REMOTE_TRANSFER_DIR}/boundary_nest.nc ${ROSE_DATAC}/${GRID_NAME}_nest_0001.nc"

200 201 202 203 204 205 206 207 208 209 210 211 212 213 214
	[[nest_suite_trigger]]
		script =""
		[[[suite state polling]]]
			interval = PT1M
			max-polls = 1440
	[[get_nest_file]]
		inherit = slurm_job_1

	[[wrf_archive_trigger]]
		script =""
		[[[suite state polling]]]
			interval = PT1M
			max-polls = 1440
		[[[job]]]
			execution retry delays = 3*PT15M
215 216 217 218 219 220
	
	[[get_archive_wrf_file]]
		inherit = remote_job
	[[convert_wrf_file]]
		inherit = slurm_job_1

221 222 223 224 225 226 227 228 229 230 231 232
	[[update_river_model]]
	[[generate_rivers]]
	[[get_river_files]]
		inherit = slurm_job_1
	[[mv_river_files]]
		inherit = remote_job
	[[write_river_number]]
		inherit = slurm_job_1
		script = """
				NO_RIVERS=$(grep "&NML_RIVER" ${ROSE_DATAC}/${GRID_NAME}_riv.nml | wc -l);
				sed -i "s|.*RIVER_NUMBER.*| RIVER_NUMBER  = ${NO_RIVERS},|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
				"""
233 234 235 236 237 238 239 240 241
	[[trigger_archive_wrf]]
                script = """
                        echo "Get the dates missing from the river model and pass to the wrf archive run" 
                        """

	[[write_empty_river_nml]]
		script = """
			echo "Make a fake riv.nml and copy to run directory" 
			"""
242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269

	[[run_fvcom]]
		inherit = slurm_job
	[[hot_cold_start]]
		inherit = remote_job
{%- if COLD_START %}
		script = """
			sed -i "s|.*STARTUP_TYPE.*|STARTUP_TYPE = 'coldstart',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_FILE.*|STARTUP_FILE = 'none',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_UV_TYPE.*|STARTUP_UV_TYPE   = 'default',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_TURB_TYPE.*|STARTUP_TURB_TYPE = 'default',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
			sed -i "s|.*STARTUP_TS_TYPE.*|STARTUP_TS_TYPE   = 'constant',|" ${ROSE_DATAC}/${GRID_NAME}_run.nml
	{%- if SEDIMENT %}
			sed -i "s|.*SED_HOT_START.*|SED_HOT_START = F|" ${ROSE_DATAC}/cstms_sediment.inp
	{%- endif %}
			"""
{%- endif %}
	[[transfer_data]]
		inherit = slurm_job_1
	[[start_cycle]]
		script = """
			echo "starting forecast cycle"
			"""
	[[transfer_restart]]
		inherit = slurm_job
		script = """
			ln -s ${ROSE_DATACP1D}/output/${GRID_NAME}_restart_0001.nc ${ROSE_DATAC}/${GRID_NAME}_restart_0001.nc
			"""