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Commit 6adff206 authored by Modellers Operational's avatar Modellers Operational

Change dimension ordering in writing out to netCDF

parent f91a3f36
...@@ -88,8 +88,8 @@ if rank == 0: ...@@ -88,8 +88,8 @@ if rank == 0:
all_attributes = {'lon':{'standard_name':'longitude', 'units':'degrees_east', 'long_name':'longitude'}, all_attributes = {'lon':{'standard_name':'longitude', 'units':'degrees_east', 'long_name':'longitude'},
'lat':{'standard_name':'latitude', 'units':'degrees_north', 'long_name':'latitude'}, 'lat':{'standard_name':'latitude', 'units':'degrees_north', 'long_name':'latitude'},
'depth':{'standard_name':'depth', 'units':'m', 'long_name':'depth, measured downwards from free surface', 'axis':'Z', 'positive':'down'}, 'depth':{'standard_name':'depth', 'units':'m', 'long_name':'depth, measured downwards from free surface', 'axis':'depth', 'positive':'down'},
'h':{'standard_name':'h', 'units':'m', 'long_name':'model bathymetry depth, measured downwards from geoid', 'axis':'Z', 'positive':'down', 'missing_value':-32768}, 'h':{'standard_name':'h', 'units':'m', 'long_name':'model bathymetry depth, measured downwards from geoid', 'axis':'depth', 'positive':'down', 'missing_value':-32768},
'temp':{'standard_name':'sea_water_potential_temperature','units':'C','missing_value':-32768, 'long_name':'Sea Water Potential Temperature'} , 'temp':{'standard_name':'sea_water_potential_temperature','units':'C','missing_value':-32768, 'long_name':'Sea Water Potential Temperature'} ,
'salinity':{'standard_name':'sea_water_salinity','units':'psu', 'missing_value':-32768, 'long_name':'Sea Water Salinity'}, 'salinity':{'standard_name':'sea_water_salinity','units':'psu', 'missing_value':-32768, 'long_name':'Sea Water Salinity'},
'u':{'standard_name':'eastward_sea_water_velocity','units':'m s-1', 'missing_value':-32768, 'long_name':'Eastward Current Velocity'}, 'u':{'standard_name':'eastward_sea_water_velocity','units':'m s-1', 'missing_value':-32768, 'long_name':'Eastward Current Velocity'},
...@@ -126,10 +126,9 @@ if rank == 0: ...@@ -126,10 +126,9 @@ if rank == 0:
for this_var, this_mode in varlist.items(): for this_var, this_mode in varlist.items():
if this_mode == 'surface': if this_mode == 'surface':
outfile.add_variable(this_var, np.swapaxes(collected_interp_data[this_var],1,2), ['time', 'lon', 'lat'], outfile.add_variable(this_var, np.swapaxes(collected_interp_data[this_var],1,2), ['time', 'lat', 'lon'], attributes=all_attributes[this_var], ncopts=ncopts)
attributes=all_attributes[this_var], ncopts=ncopts)
else: else:
outfile.add_variable(this_var, np.swapaxes(collected_interp_data[this_var],1,3), ['time', 'lon', 'lat', 'depth'], outfile.add_variable(this_var, np.swapaxes(collected_interp_data[this_var],1,3), ['time', 'depth', 'lat','lon'],
attributes=all_attributes[this_var], ncopts=ncopts) attributes=all_attributes[this_var], ncopts=ncopts)
else: else:
......
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