Commit a8446449 authored by Pierre Cazenave's avatar Pierre Cazenave

Update the documentation.

parent a159b729
......@@ -59,6 +59,6 @@ This function is called by:
0007 <span class="comment">% Revision history</span>
0008 <span class="comment">%</span>
0009 <span class="comment">%==============================================================================</span></pre></div>
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......@@ -184,6 +184,6 @@ This function is called by:
0120 <span class="comment">% vector plots requires correct lat and lon for u and v positions: FVCOM.xc</span>
0121 <span class="comment">% and FVCOM.yc. Remember to extract them</span>
0122 PLotoutV=do_vector_plot(plotOPTS,FVCOM)</pre></div>
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......@@ -24,6 +24,6 @@
</map>
</center>
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......@@ -29,6 +29,6 @@
<ul style="list-style-image:url(../simulinkicon.gif)">
<li>View the <a href="graph.html">Graph</a>.</li>
</ul>
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......@@ -39,6 +39,11 @@
Geoff Cowles (University of Massachusetts Dartmouth)
Ricardo Torres (Plymouth Marine Laboratory)
Pierre Cazenave (Plymouth Marine Laboratory)
Karen Amoudry (National Oceanography Centre, Liverpool)
Rory O'Hara Murray (Marine Scotland Science)
Hakeem Johnson (CH2M-Hill)
Chang Liu (University of Massachusetts Dartmouth)
Jenny Brown (National Oceanography Centre, Liverpool)
Revision history
......@@ -69,10 +74,15 @@ This function is called by:
0010 <span class="comment">% Geoff Cowles (University of Massachusetts Dartmouth)</span>
0011 <span class="comment">% Ricardo Torres (Plymouth Marine Laboratory)</span>
0012 <span class="comment">% Pierre Cazenave (Plymouth Marine Laboratory)</span>
0013 <span class="comment">%</span>
0014 <span class="comment">% Revision history</span>
0015 <span class="comment">%</span>
0016 <span class="comment">%==============================================================================</span></pre></div>
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0013 <span class="comment">% Karen Amoudry (National Oceanography Centre, Liverpool)</span>
0014 <span class="comment">% Rory O'Hara Murray (Marine Scotland Science)</span>
0015 <span class="comment">% Hakeem Johnson (CH2M-Hill)</span>
0016 <span class="comment">% Chang Liu (University of Massachusetts Dartmouth)</span>
0017 <span class="comment">% Jenny Brown (National Oceanography Centre, Liverpool)</span>
0018 <span class="comment">%</span>
0019 <span class="comment">% Revision history</span>
0020 <span class="comment">%</span>
0021 <span class="comment">%==============================================================================</span></pre></div>
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......@@ -62,7 +62,7 @@ This function calls:
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="example.html" class="code" title="">example</a> example demonstrating reading in a 2DM file and constructing a model</li><li><a href="read_grid_mesh.html" class="code" title="function [Mobj] = read_grid_mesh(varargin)">read_grid_mesh</a> Read .grid mesh files into Matlab mesh object</li></ul>
<li><a href="read_grid_mesh.html" class="code" title="function [Mobj] = read_grid_mesh(varargin)">read_grid_mesh</a> Read .grid mesh files into Matlab mesh object</li><li><a href="read_sms_mesh.html" class="code" title="function [Mobj] = read_sms_mesh(varargin)">read_sms_mesh</a> Read sms mesh files into Matlab mesh object.</li></ul>
<!-- crossreference -->
......@@ -111,7 +111,7 @@ This function is called by:
0041 <span class="keyword">if</span>(exist(<span class="string">'cortype'</span>))
0042 <span class="keyword">if</span>(cortype(1:3)==<span class="string">'use'</span>)
0043 CorType = <span class="string">'uselatitude'</span>;
0044 <span class="keyword">if</span>(~Mobj.have_cor)
0044 <span class="keyword">if</span>(~Mobj.have_lonlat)
0045 error(<span class="string">'To set Coriolis with latitude, need (lon,lat) field in Mesh structure'</span>)
0046 <span class="keyword">end</span>;
0047 <span class="keyword">else</span>
......@@ -144,6 +144,6 @@ This function is called by:
0074
0075
0076</pre></div>
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......@@ -160,6 +160,6 @@ This function is called by:
0088 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0089 <span class="keyword">end</span>;
0090</pre></div>
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......@@ -69,7 +69,7 @@ This function calls:
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="example.html" class="code" title="">example</a> example demonstrating reading in a 2DM file and constructing a model</li></ul>
</ul>
<!-- crossreference -->
......@@ -174,6 +174,6 @@ This function is called by:
0097 fprintf(<span class="string">'\nend : %s\n'</span>, subname)
0098 <span class="keyword">end</span>
0099</pre></div>
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......@@ -166,6 +166,6 @@ This function is called by:
0094 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0095 <span class="keyword">end</span>;
0096</pre></div>
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......@@ -71,7 +71,7 @@ This function calls:
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="example.html" class="code" title="">example</a> example demonstrating reading in a 2DM file and constructing a model</li></ul>
</ul>
<!-- crossreference -->
......@@ -175,6 +175,6 @@ This function is called by:
0096 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0097 <span class="keyword">end</span>
0098</pre></div>
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......@@ -91,6 +91,6 @@ This function is called by:
0045 nc = close(nc);
0046
0047</pre></div>
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......@@ -157,6 +157,6 @@ This function is called by:
0085
0086 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0087</pre></div>
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......@@ -169,6 +169,6 @@ This function is called by:
0094 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0095 <span class="keyword">end</span>
0096</pre></div>
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......@@ -207,6 +207,6 @@ This function is called by:
0115 <span class="keyword">if</span> ftbverbose
0116 fprintf(<span class="string">'\nend : %s\n'</span>, subname)
0117 <span class="keyword">end</span></pre></div>
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......@@ -66,7 +66,7 @@ This function calls:
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="example_FVCOM_river.html" class="code" title="function example_FVCOM_river()">example_FVCOM_river</a> example file for dumping an FVCOM river file and adding sediment concentration</li></ul>
</ul>
<!-- crossreference -->
......@@ -172,6 +172,6 @@ This function is called by:
0098 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0099 <span class="keyword">end</span>;
0100</pre></div>
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......@@ -170,6 +170,6 @@ This function is called by:
0094 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0095 <span class="keyword">end</span>
0096</pre></div>
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......@@ -404,6 +404,6 @@ This function is called by:
0326 <a href="write_nesting_bdy_file.html" class="code" title="function write_nesting_bdy_file(Mobj, MJD, OutFile, MyTitle)">write_nesting_bdy_file</a>(FV_OBC, FV_OBC.time-datenum(1858,11,17,0,0,0)+shift, HDFile, MyTitle);
0327
0328 disp(<span class="string">'net cdf wave file written'</span>);</pre></div>
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......@@ -202,6 +202,6 @@ This function is called by:
0131 fclose(fid);
0132
0133 disp(<span class="string">'finished creating nesting file'</span>);</pre></div>
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......@@ -58,7 +58,7 @@ This function calls:
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="example.html" class="code" title="">example</a> example demonstrating reading in a 2DM file and constructing a model</li></ul>
</ul>
<!-- crossreference -->
......@@ -123,6 +123,6 @@ This function is called by:
0057
0058 <span class="comment">%fprintf(['end : ' subname '\n'])</span>
0059</pre></div>
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......@@ -60,7 +60,7 @@ This function calls:
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="example.html" class="code" title="">example</a> example demonstrating reading in a 2DM file and constructing a model</li></ul>
</ul>
<!-- crossreference -->
<h2><a name="_subfunctions"></a>SUBFUNCTIONS <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
......@@ -131,7 +131,7 @@ This function is called by:
0061 nVerts = Mobj.nVerts;
0062 nElems = Mobj.nElems;
0063
0064 ts = ones(nVerts,1)*1e9;
0064 ts = inf(nVerts,1);
0065 lside = zeros(nVerts,1);
0066 <span class="keyword">for</span> i=1:nElems
0067 n1 = tri(i,1);
......@@ -141,14 +141,14 @@ This function is called by:
0071 <span class="comment">% Check whether we have x and y values and use great circle</span>
0072 <span class="comment">% approximations if we don't.</span>
0073 <span class="keyword">if</span> Mobj.have_xy
0074 lside(i) = sqrt( (x(n1)-x(n2))^2 + (y(n1)-y(n2))^2);
0074 lside(i) = sqrt((x(n1)-x(n2))^2 + (y(n1)-y(n2))^2);
0075 <span class="keyword">else</span>
0076 lside(i) = <a href="#_sub1" class="code" title="subfunction [km]=haversine(lat1,lon1,lat2,lon2)">haversine</a>(x(n1),y(n1),x(n2),y(n2));
0077 <span class="keyword">end</span>
0078 dpth = max(h(nds))+zeta;
0079 dpth = max(dpth,1);
0080 ts(nds) = min(ts(nds),lside(i)/(sqrt(g*dpth) + u));
0081 <span class="keyword">end</span>;
0081 <span class="keyword">end</span>
0082 <span class="keyword">if</span>(ftbverbose); fprintf(<span class="string">'minimum time step: %f seconds\n'</span>,min(ts)); <span class="keyword">end</span>;
0083 Mobj.ts = ts;
0084 Mobj.have_ts = true;
......@@ -171,6 +171,6 @@ This function is called by:
0101 c = 2 * atan2(sqrt(a), sqrt(1-a));
0102 km = R * c; <span class="comment">% distance in metres</span>
0103</pre></div>
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......@@ -138,6 +138,6 @@ This function is called by:
0069 <span class="comment">% end</span>
0070
0071</pre></div>
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......@@ -143,6 +143,6 @@ This function is called by:
0068 <span class="comment">% end</span>
0069
0070</pre></div>
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......@@ -211,6 +211,6 @@ This function is called by:
0140 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0141
0142</pre></div>
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......@@ -194,6 +194,6 @@ This function is called by:
0121 <span class="comment">%write_dtank('junk.dtascii',Mobj);</span>
0122
0123</pre></div>
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......@@ -162,6 +162,6 @@ This function is called by:
0091 <span class="keyword">if</span>(ftbverbose);
0092 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>]);
0093 <span class="keyword">end</span></pre></div>
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......@@ -405,6 +405,6 @@ This function is called by:
0293 <span class="keyword">if</span> ftbverbose
0294 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0295 <span class="keyword">end</span></pre></div>
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......@@ -117,6 +117,6 @@ This function is called by:
0048
0049 <span class="keyword">end</span>
0050</pre></div>
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<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -119,6 +119,6 @@ This function is called by:
0050
0051 <span class="keyword">end</span>
0052</pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -402,6 +402,6 @@ This function is called by:
0299 <span class="keyword">if</span> ftbverbose
0300 fprintf(<span class="string">'end : %s \n'</span>, subname)
0301 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -462,6 +462,6 @@ This function is called by:
0383 <span class="keyword">if</span>(ftbverbose);
0384 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>]);
0385 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -487,6 +487,6 @@ This function is called by:
0380 <span class="comment">% pause(0.1)</span>
0381 <span class="comment">% end</span>
0382</pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -228,6 +228,6 @@ This function is called by:
0142 <span class="keyword">if</span> ftbverbose
0143 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0144 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -139,6 +139,6 @@ This function is called by:
0067 <span class="keyword">if</span> ftbverbose
0068 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0069 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -200,6 +200,6 @@ This function is called by:
0129 <span class="keyword">if</span> ftbverbose
0130 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0131 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -151,6 +151,6 @@ This function is called by:
0069 <span class="keyword">if</span> ftbverbose
0070 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0071 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -460,6 +460,6 @@ This function is called by:
0355 <span class="comment">% plot(lon(yidx, xidx), lat(yidx, xidx), 'rs') % polcoms is all backwards</span>
0356 <span class="comment">% plot(Mobj.lon(oNodes(nn)), Mobj.lat(oNodes(nn)), 'wo')</span>
0357 <span class="comment">% colorbar</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -453,6 +453,6 @@ This function is called by:
0346 <span class="keyword">if</span> ftbverbose
0347 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0348 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -399,6 +399,6 @@ This function is called by:
0307 matlabpool close
0308 <span class="keyword">end</span>
0309 <span class="keyword">return</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
</body>
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......@@ -323,6 +323,6 @@ This function is called by:
0229 <span class="keyword">if</span> ftbverbose
0230 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>])
0231 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -266,6 +266,6 @@ This function is called by:
0190 <span class="comment">% hold on</span>
0191 <span class="comment">% plot(data(point,2), data(point,1), 'rx')</span>
0192</pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
</body>
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......@@ -235,6 +235,6 @@ This function is called by:
0162 <span class="keyword">if</span>(ftbverbose);
0163 fprintf([<span class="string">'end : '</span> subname <span class="string">'\n'</span>]);
0164 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -137,6 +137,6 @@ This function is called by:
0069
0070
0071</pre></div>
<hr><address>Generated on Thu 19-Mar-2015 12:20:56 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
<hr><address>Generated on Mon 07-Dec-2015 09:59:26 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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......@@ -9,37 +9,6 @@ digraph m2html {
create_HD_nest_bdy_TYPE3 -> read_fvcom_bath;
create_HD_nest_bdy_TYPE3 -> write_nesting_bdy_file;
create_nesting_nodes -> get_HD_OBC;
example -> add_coriolis;
example -> add_obc_nodes_list;
example -> add_river_nodes_list;
example -> elems2nodes;
example -> estimate_ts;
example -> example_FVCOM_river;
example -> example_FVCOM_tsobc;
example -> example_FVCOM_wind_ts;
example -> nodes2elems;
example -> plot_field;
example -> read_sms_mesh;
example -> set_spectide;
example -> setup_metrics;
example -> smoothfield;
example -> write_FVCOM_bath;
example -> write_FVCOM_bedflag;
example -> write_FVCOM_cor;
example -> write_FVCOM_grid;
example -> write_FVCOM_obc;
example -> write_FVCOM_sponge;
example -> write_FVCOM_z0;
example2 -> plot_field;
example2 -> read_fvcom_bath;
example2 -> setup_metrics;
example2 -> smoothfield;
example2 -> write_FVCOM_bath;
example_FVCOM_river -> add_var_FVCOM_river;
example_FVCOM_river -> write_FVCOM_river;
example_init_lag -> plot_field;
example_init_lag -> read_fvcom_bath;
example_init_lag -> setup_metrics;
gen_semistructured_mesh -> make_blank_mesh;
gen_unstructured_mesh -> make_blank_mesh;
get_POLCOMS_meanflow -> get_POLCOMS_netCDF;
......@@ -53,12 +22,14 @@ digraph m2html {
read_grid_mesh -> add_coriolis;
read_grid_mesh -> make_blank_mesh;
read_sigma -> nodes2elems;
read_sms_mesh -> add_coriolis;
read_sms_mesh -> make_blank_mesh;
read_sms_mesh -> my_project;
read_sms_mesh -> nodes2elems;
set_elevtide -> write_FVCOM_elevtide;
set_spectide -> write_FVCOM_spectide;
wrf2fvcom_U10V10 -> my_project;
tidal_turbine_example -> nodes2elems;
tidal_turbine_example -> read_fvcom_bath;
tidal_turbine_example -> write_FVCOM_TT;
write_FVCOM_forcing -> nodes2elems;
write_FVCOM_heating -> nodes2elems;
......@@ -78,22 +49,16 @@ digraph m2html {
create_nesting_nodes [URL="create_nesting_nodes.html"];
elems2nodes [URL="elems2nodes.html"];
estimate_ts [URL="estimate_ts.html"];
example [URL="example.html"];
example2 [URL="example2.html"];
example_FVCOM_river [URL="example_FVCOM_river.html"];
example_FVCOM_tsobc [URL="example_FVCOM_tsobc.html"];
example_FVCOM_wind_ts [URL="example_FVCOM_wind_ts.html"];
example_FVCOM_wind_ts_speed [URL="example_FVCOM_wind_ts_speed.html"];
example_init_lag [URL="example_init_lag.html"];
example_my_project [URL="example_my_project.html"];
extract_mesoscale [URL="extract_mesoscale.html"];
find_nearest_pt [URL="find_nearest_pt.html"];
fix_river_nodes [URL="fix_river_nodes.html"];
gen_semistructured_mesh [URL="gen_semistructured_mesh.html"];
gen_unstructured_mesh [URL="gen_unstructured_mesh.html"];
generate_mjd [URL="generate_mjd.html"];
get_AMM [URL="get_AMM.html"];
get_CFS_forcing [URL="get_CFS_forcing.html"];
get_EA_river_climatology [URL="get_EA_river_climatology.html"];
get_EHYPE_rivers [URL="get_EHYPE_rivers.html"];
get_ERA_forcing [URL="get_ERA_forcing.html"];
get_FVCOM_rivers [URL="get_FVCOM_rivers.html"];
get_HD_OBC [URL="get_HD_OBC.html"];
get_HD_nesting_nodes [URL="get_HD_nesting_nodes.html"];
......@@ -119,7 +84,6 @@ digraph m2html {
interp_HYCOM2FVCOM [URL="interp_HYCOM2FVCOM.html"];
interp_POLCOMS2FVCOM [URL="interp_POLCOMS2FVCOM.html"];
make_blank_mesh [URL="make_blank_mesh.html"];
my_project [URL="my_project.html"];
nodes2elems [URL="nodes2elems.html"];
plot_field [URL="plot_field.html"];
read_ERA_wind [URL="read_ERA_wind.html"];
......@@ -138,14 +102,18 @@ digraph m2html {
setup_metrics [URL="setup_metrics.html"];
smoothfield [URL="smoothfield.html"];
smoothfield2 [URL="smoothfield2.html"];
tidal_turbine_example [URL="tidal_turbine_example.html"];
truncfield [URL="truncfield.html"];
wrf2fvcom [URL="wrf2fvcom.html"];
wrf2fvcom_U10V10 [URL="wrf2fvcom_U10V10.html"];
write_FVCOM_TT [URL="write_FVCOM_TT.html"];
write_FVCOM_bath [URL="write_FVCOM_bath.html"];
write_FVCOM_bedflag [URL="write_FVCOM_bedflag.html"];
write_FVCOM_cor [URL="write_FVCOM_cor.html"];
write_FVCOM_elevtide [URL="write_FVCOM_elevtide.html"];
write_FVCOM_forcing [URL="write_FVCOM_forcing.html"];
write_FVCOM_grid [URL="write_FVCOM_grid.html"];
write_FVCOM_groundwater [URL="write_FVCOM_groundwater.html"];
write_FVCOM_heating [URL="write_FVCOM_heating.html"];
write_FVCOM_meanflow [URL="write_FVCOM_meanflow.html"];
write_FVCOM_meanflow_ascii [URL="write_FVCOM_meanflow_ascii.html"];
......
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