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Remove the old POLCOMS versions of the scripts and replace with those designed against the daily mean files from the AMM domain. Adjust the comments and variable names accordingly

Fix variable name clash between the data read in from the NetCDF file and the data supplied to the function (i.e. the interpolated data)

Remove the commented out NetCDF section at the end of the file (work which is now done by write_FVCOM_restart.m in create_files.m)

Function removed and split into several more flexible functions (interp_AMM2FVCOM.m, grid_vert_interp.m, get_AMM_netCDF.m and write_FVCOM_restart

Code taken from replace_FVCOM_restart_vars.m which did the cloning of the restart NetCDF file and replaced the requested variables with interpolated versions. This makes it easier to generate restart files using a range of sources

New function based on the old replace_FVCOM_restart_vars.m but with more general reuse in mind. Instead of writing to NetCDF directly, this functino now exports the interpolated variables to the MATLAB mesh object and the NetCDF writing has been exported to write_FVCOM_restart.m

Helper function to do the interpolation of the regularly gridded POLCOMS-ERSEM daily mean model output onto the FVCOM vertical grid

Helper function for interp_AMM2FVCOM.m and get_AMM_tsobc.m to do the reading in from the POLCOMS-ERSEM AMM domain mean daily NetCDF files

Undo the depth profile inversion since using the depths to interpolate means the values are reordered if necessary

1. The depth values I was extracting from the variable bathymetry weren't suitable (they lacked the vertical intervals necessary for the vertical interpolation).

2. POLCOMS vertical structure starts at the seabed whereas FVCOM starts at the surface. As things stood, the vertical profiles were being interpolated upside down.

Other miscellaneous changes to remove variable names based on POLCOMS (pc*).

Fix the vertical interpolation of POLCOMS derived temperature and salinity profiles. This is because POLCOMS starts its vertical layers from the seabed whilst FVCOM from the sea surface

Fix the vertical interpolation of POLCOMS derived temperature and salinity profiles. This is because POLCOMS starts its vertical layers from the seabed whilst FVCOM from the sea surface

Add script to take MyOcean daily mean NetCDFs and interpolate temperature and salinity at the open boundaries. This is almost identical to the get_POLCOMS_tsobc.m script, but the two file formats are sufficiently different that I have not yet been able to create a generic function to read both. One day...

Propagate the changes from get_POLCOMS_tsobc.m to this file to support reading in multiple NetCDF files and concatenating their data along the time axis. This also includes a section to replace the times in the restart file with an arbitrary time period, but this is commented out. This is useful if the restart file does not belong to the same time period as the data and you essentially want the restart file as a template only

Add support for reading in multiple POLCOMS NetCDF files. This should remain backwards compatible with single file names as input

Update the ChangeLog to include a more comprehensive list of the changes between the current and original versions of the fvcom-toolbox

Update the ChangeLog to include a more comprehensive list of the changes between the current and original versions of the fvcom-toolbox

Start creating the functions necessary to load HYCOM data for the unstructured grid model boundaries. Progress is slow going due to the terrible network speeds from the HYCOM OPeNDAP server

Tool from the mesh2D toolbox to calculate unstructured grid connectivity (including finding edge nodes, which is useful for plotting the coastline)