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Commit 47dc88d3 authored by Ricardo Torres's avatar Ricardo Torres 💬

Added low level constant zooplankton variables to river ERSEM file.

parent 167302da
......@@ -157,6 +157,23 @@ netcdf.putAtt(nc, river_bioalk_varid, 'long_name', 'carbonate bioalkalinity');
netcdf.putAtt(nc, river_bioalk_varid, 'units', 'umol/kg');
% Additional zooplankton variables
zoo_vars = {'Z5','Z6'};
zuu_nuts = {'n','p','c'}
zoo_long = {'microzooplankton','nanoflagellates'}
nuts_long = {'nitrogen','phosphorus','nitrogen'}
nuts_units = {'mmol N/m^3','mmol P/m^3','mg C/m^3'}
river_Z4c_varid = netcdf.defVar(nc, 'Z4_c', 'NC_FLOAT', [rivers_dimid, time_dimid]);
netcdf.putAtt(nc, river_z4c_varid, 'long_name', 'mesozooplankton carbon');
netcdf.putAtt(nc, river_z4c_varid, 'units', 'mg C/m^3');
for zz=1:length(zoo_vars)
for nn=1:length(zuu_nuts)
eval(['river_',zoo_vars{zz},zuu_nuts{nn},'_varid = netcdf.defVar(nc, ''',zoo_vars{zz},'_',zuu_nuts{nn},''', ''NC_FLOAT'', [rivers_dimid, time_dimid]);'])
eval(['netcdf.putAtt(nc, river_',zoo_vars{zz},zuu_nuts{nn},'_varid, ''long_name'', ''',zoo_long{zz},' ',nuts_long{nn},''');'])
eval(['netcdf.putAtt(nc, river_',zoo_vars{zz},zuu_nuts{nn},'_varid, ''units'', ''',nuts_units{nn},''');'])
......@@ -188,6 +205,17 @@ netcdf.putVar(nc, river_dic_varid, dic');
netcdf.putVar(nc, river_O2_varid, o2');
netcdf.putVar(nc, river_TA_varid, alkalinity');
netcdf.putVar(nc, river_bioalk_varid,bioalk');
% add small zooplankton values
% taken to be 10^-6 of L4 initial conditions.
fac = 10^-6;
netcdf.putVar(nc, river_Z4c_varid,ones(size(bioalk')).*1.2*fac);
netcdf.putVar(nc, river_Z5c_varid,ones(size(bioalk')).*7.2*fac);
netcdf.putVar(nc, river_Z5n_varid,ones(size(bioalk')).*0.12*fac);
netcdf.putVar(nc, river_Z5p_varid,ones(size(bioalk')).*0.0113*fac);
netcdf.putVar(nc, river_Z6c_varid,ones(size(bioalk')).*2.4*fac);
netcdf.putVar(nc, river_Z6n_varid,ones(size(bioalk')).*0.0505*fac);
netcdf.putVar(nc, river_Z6p_varid,ones(size(bioalk')).*0.0047*fac); % not quite the initiall values in fabm.yaml... but they are not in carbon balance...
% build the time string and output to netCDF.
nStringOut = char();
[nYr, nMon, nDay, nHour, nMin, nSec] = mjulian2greg(time);
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