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Commit 16e550e6 authored by Pierre Cazenave's avatar Pierre Cazenave

A first attempt at writing out a mean flow NetCDF input file based on an example from Dima

parent 25cc1f95
function write_FVCOM_meanflow(Mobj, outfile, data)
% Export mean flow forcing at the open boundary to NetCDF.
% function write_FVCOM_meanflow(Mobj, outfile, data)
% Setup an FVCOM hydrographic open boundary mean flow forcing file.
% Mobj - MATLAB mesh object.
% outfile - Output file name.
% data - 2D array of mean flow along the open boundary (nobc, time).
% FVCOM mean flow values along the FVCOM open boundary in a file named
% outfile.
% Author(s):
% Pierre Cazenave (Plymouth Marine Laboratory)
% Revision history
% 2013-02-20 - First version.
subname = 'write_FVCOM_meanflow';
global ftbverbose
if ftbverbose
fprintf('\n'); fprintf(['begin : ' subname '\n']);
% open new NetCDF file
nc = netcdf.create(outfile, 'clobber');
% define dimensions
netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'), 'type', 'FVCOM MEANFLOW TIME SERIES FILE')
netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'), 'title', 'FVCOM MEANFLOW TIME SERIES data for open boundary')
netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'), 'history', 'File created using the write_FVCOM_meanflow.m from the MATLAB fvcom-toolbox')
netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'), 'filename', outfile)
netcdf.putAtt(nc,netcdf.getConstant('NC_GLOBAL'), 'Conventions', 'CF-1.0')
% define dimensions
nmfcell_dimid = netcdf.defDim(nc, 'nmfcell', Mobj.nObcNodes);
time_dimid = netcdf.defDim(nc, 'time', netcdf.getConstant('NC_UNLIMITED'));
siglay_dimid = netcdf.defDim(nc, 'siglay', size(Mobj.siglay, 2));
siglev_dimid = netcdf.defDim(nc, 'siglev', size(Mobj.siglev, 2));
time_varid = netcdf.defVar(nc, 'time', 'NC_FLOAT', time_dimid);
netcdf.putAtt(nc, time_varid, 'long_name', 'time');
netcdf.putAtt(nc, time_varid, 'units', 'days since 1858-11-17 00:00:00');
netcdf.putAtt(nc, time_varid, 'format', 'modified julian day (MJD)');
netcdf.putAtt(nc, time_varid, 'time_zone', 'UTC');
itime_varid = netcdf.defVar(nc, 'Itime', 'NC_INT', time_dimid);
netcdf.putAtt(nc, itime_varid, 'units', 'days since 1858-11-17 00:00:00');
netcdf.putAtt(nc, itime_varid, 'format', 'modified julian day (MJD)');
netcdf.putAtt(nc, itime_varid, 'time_zone', 'UTC');
itime2_varid = netcdf.defVar(nc, 'Itime2', 'NC_INT', time_dimid);
netcdf.putAtt(nc, itime2_varid, 'units', 'msec since 00:00:00');
netcdf.putAtt(nc, itime2_varid, 'time_zone', 'UTC');
nmfcell_varid = netcdf.defVar(nc, 'I_MFCELL_GL', 'NC_INT', nmfcell_dimid);
netcdf.putAtt(nc, nmfcell_varid, 'long_name', 'Open Boundary Cell Number');
netcdf.putAtt(nc, nmfcell_varid, 'grid', 'obc_grid');
netcdf.putAtt(nc, nmfcell_varid, 'type', 'data');
mfdist_varid = netcdf.defVar(nc, 'MFDIST', 'NC_FLOAT', [siglay_dimid, nmfcell_dimid]);
netcdf.putAtt(nc, mfdist_varid, 'long_name', 'Mean Flow Flux Vertical Distribution');
netcdf.putAtt(nc, mfdist_varid, 'units', 'no units');
netcdf.putAtt(nc, mfdist_varid, 'grid', 'obc_grid');
netcdf.putAtt(nc, mfdist_varid, 'type', 'data');
dmfqdis_varid = netcdf.defVar(nc, 'DMFQDIS', 'NC_FLOAT', [nmfcell_dimid, time_dimid]);
netcdf.putAtt(nc, dmfqdis_varid, 'long_name', 'open boundary mean flow flux');
netcdf.putAtt(nc, dmfqdis_varid, 'units', 'm^3/s');
netcdf.putAtt(nc, dmfqdis_varid, 'grid', 'obc_grid');
netcdf.putAtt(nc, dmfqdis_varid, 'type', 'data');
% end definitions
% write data
netcdf.putVar(nc, time_varid, 0, numel(Mobj.mf_times), Mobj.mf_times);
netcdf.putVar(nc, itime_varid, floor(Mobj.mf_times));
netcdf.putVar(nc, itime2_varid, 0, numel(Mobj.mf_times), mod(Mobj.mf_times, 1) * 24 * 3600 * 1000);
netcdf.putVar(nc, nmfcell_varid, Mobj.read_obc_nodes{1});
netcdf.putVar(nc, dmfqdis_varid, [0, 0], [numel(Mobj.mf_times), numel(Mobj.read_obc_nodes{1})], Mobj.velocity);
if ftbverbose
fprintf(['end : ' subname '\n'])
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