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Commit 83da67de authored by Pierre Cazenave's avatar Pierre Cazenave

Merge branch 'master' of gitlab.ecosystem-modelling.pml.ac.uk:pica/fvcom-examples

parents b1732fc4 d870b9ea
......@@ -21,6 +21,7 @@ data
*/run/logs
matlab/mat
shp
*/run/launch
# Run files
FVCOM.*.HP.*
#!/bin/bash
#PBS -l select=4:ncpus=8:mpiprocs=8
#PBS -l place=scatter
#PBS -N FVCOM.32.HP
echo "=== begin of FVCOM section"
date
cat $PBS_NODEFILE
NNODES=`cat $PBS_NODEFILE | uniq | wc -l`
NTASKS=`cat $PBS_NODEFILE | wc -l`
echo $PBS_NODEFILE $NTASKS $NNODES > $HOME/run.log
cp $PBS_NODEFILE $HOME
CFILE=/tmp/mpd2.console_bench_$PBS_JOBID
source /opt/intel/fce/10.1.012/bin/ifortvars.sh
source /opt/intel/cce/10.1.012/bin/iccvars.sh
source /opt/mpi/mpibull2-1.3.5-4.t/share/setenv_mpibull2.sh
source /opt/intel/idbe/10.1.012/bin/idbvars.sh
export IDB_HOME=/opt/intel/idbe/10.1.012/bin/
mpibull2-devices -d=ibmr_gen2
export NUM_RDMA_BUFFER=0
export MPIBULL2_USE_POSTAL=0
ulimit -Ss unlimited
PF=`date +%y%m%d-%H%M%S`
RUNDIR=/home_nfs/pica/models/FVCOM/fvcom-examples/Estuary/run
EXE=${RUNDIR}/fvcom
CASENAME=tst
#WDIR=${DATA}-${PF}-${NTASKS}
WDIR=`pwd`
cd $RUNDIR
pwd
echo "working directory : $WDIR"
driver=`mpibull2-devices -c | grep "driver" | cut -d":" -f2 | sed "s, ,,"`
if [ "x$driver" != "xibmr_gen2" ]
then
echo "driver = |${driver}|"
echo "Cannot set comm driver to ibmr_gen2!"
exit
fi
export LD_PRELOAD=/home_nfs/bench/libaffinity/arch/mpibull2-1.3.5/lib/libmpiaffinity.so
export LD_LIBRARY_PATH=/home_nfs/pica/src/UK-FVCOM/FVCOM/PML/src/FVCOM_source/libs/install/lib/:$LD_LIBRARY_PATH
if [ "8" == "8" ]
then
export MPI_SETAFFINITY=rank
else
export MPI_SETAFFINITY=topo:scatter,L2
fi
export MKL_SERIAL=yes
export OMP_NUM_THREADS=1
# following two lines needed for core dumping
export decfort_dump_flag=y
ulimit -c unlimited
export F_UFMTENDIAN=77,78
touch logs/info
date >> logs/info
env >> logs/info
ulimit -a >> logs/info
cat $PBS_NODEFILE >> logs/info
mpibull2-devices -c > logs/mpi.device
echo "$NNODES $NTASKS"
echo "running fvcom ..."
pwd
LF=logs/$CASENAME.$NNODES.$NTASKS.log
time mpirun -np $NTASKS $EXE --casename $CASENAME --dbg=0 | tee $LF
for node in `cat $PBS_NODEFILE | uniq ` ; do ssh $node "rm -f $CFILE" ; done
!================================================================!
_______ _ _ _______ _______ _______ ______ _____
(_______)(_) (_)(_______)(_______)(_______)(_____ \ (_____)
_____ _ _ _ _ _ _ _ _ _____) ) _ __ _
| ___) | | | || | | | | || ||_|| |(_____ ( | |/ /| |
| | \ \ / / | |_____ | |___| || | | | _____) )_| /_| |
|_| \___/ \______) \_____/ |_| |_|(______/(_)\_____/
-- Beta Release
!================================================================!
! !
!========DOMAIN DECOMPOSITION USING: METIS 4.0.1 ================!
!======Copyright 1998, Regents of University of Minnesota========!
! !
&NML_CASE
CASE_TITLE = 'IDEAL ESTUARY CASE'
TIMEZONE = 'UTC',
DATE_FORMAT = 'YMD'
DATE_REFERENCE = 'default',
START_DATE = '2013-04-01 00:00:00'
END_DATE = '2013-04-30 00:00:00'
/
&NML_STARTUP
STARTUP_TYPE = 'coldstart' ,
STARTUP_FILE = 'none' ,
STARTUP_UV_TYPE = 'default' ,
STARTUP_TURB_TYPE = 'default' ,
STARTUP_TS_TYPE = 'constant' ,
STARTUP_T_VALS = 15.0 ,
STARTUP_S_VALS = 35.0 ,
STARTUP_U_VALS = 0.0,
STARTUP_V_VALS = 0.0,
STARTUP_DMAX = -10.00000
/
&NML_IO
INPUT_DIR = '../tstinp' ,
OUTPUT_DIR = './output' ,
IREPORT = 40,
VISIT_ALL_VARS = F,
WAIT_FOR_VISIT = F,
USE_MPI_IO_MODE = F
/
&NML_INTEGRATION
EXTSTEP_SECONDS = 5.00 ,
ISPLIT = 10,
IRAMP = 500 ,
MIN_DEPTH = 0.05000000E+00,
STATIC_SSH_ADJ = 0.0000000E+00
/
&NML_RESTART
RST_ON = F,
RST_FIRST_OUT = '2013-04-01 00:00:00' ,
RST_OUT_INTERVAL = 'seconds=3600' ,
RST_OUTPUT_STACK = 0
/
&NML_NETCDF
NC_ON = T,
NC_FIRST_OUT = '2013-04-01 00:00:00',
NC_OUT_INTERVAL = 'seconds=3600.' ,
NC_OUTPUT_STACK = 0,
NC_GRID_METRICS = T,
NC_FILE_DATE = T,
NC_VELOCITY = T,
NC_SALT_TEMP = T,
NC_TURBULENCE = T,
NC_AVERAGE_VEL = T,
NC_VERTICAL_VEL = T,
NC_WIND_VEL = F,
NC_WIND_STRESS = F,
NC_EVAP_PRECIP = F,
NC_SURFACE_HEAT = F,
NC_GROUNDWATER = F
/
&NML_NETCDF_AV
NCAV_ON = F,
NCAV_FIRST_OUT = 'none' ,
NCAV_OUT_INTERVAL = 'none' ,
NCAV_OUTPUT_STACK = 0,
NCAV_SUBDOMAIN_FILES = ,
NCAV_GRID_METRICS = F,
NCAV_FILE_DATE = F,
NCAV_VELOCITY = F,
NCAV_SALT_TEMP = F,
NCAV_TURBULENCE = F,
NCAV_AVERAGE_VEL = F,
NCAV_VERTICAL_VEL = F,
NCAV_WIND_VEL = F,
NCAV_WIND_STRESS = F,
NCAV_EVAP_PRECIP = F,
NCAV_SURFACE_HEAT = F,
NCAV_GROUNDWATER = F,
NCAV_BIO = F,
NCAV_WQM = F,
NCAV_VORTICITY = F
/
&NML_SURFACE_FORCING
wIND_ON = T,
WIND_TYPE = 'speed' ,
WIND_FILE = 'tst_wnd.nc' ,
WIND_KIND = 'variable' ,
WIND_X = 0.0000000E+00,
WIND_Y = 0.0000000E+00,
HEATING_ON = F,
HEATING_TYPE = 'flux' ,
HEATING_KIND = 'variable' ,
HEATING_FILE = 'tst_wnd.nc' ,
HEATING_LONGWAVE_LENGTHSCALE = 6.3 ,
HEATING_LONGWAVE_PERCTAGE = 0.78000000 ,
HEATING_SHORTWAVE_LENGTHSCALE = 1.4000000 ,
HEATING_RADIATION = 0.0000000E+00,
HEATING_NETFLUX = 0.0000000E+00,
PRECIPITATION_ON = F,
PRECIPITATION_KIND = 'variable' ,
PRECIPITATION_FILE = 'wrf_for.nc' ,
PRECIPITATION_PRC = 0.0000000E+00,
PRECIPITATION_EVP = 0.0000000E+00,
AIRPRESSURE_ON = T,
AIRPRESSURE_KIND = 'variable' ,
AIRPRESSURE_FILE = 'tst_wnd.nc' ,
AIRPRESSURE_VALUE = 0.0000000E+00
/
&NML_HEATING_CALCULATED
HEATING_CALCULATE_ON = T,
HEATING_CALCULATE_TYPE = 'flux',
HEATING_CALCULATE_FILE = tst_wnd.nc,
HEATING_CALCULATE_KIND = variable,
ZUU = 10.0,
ZTT = 1.5,
ZQQ = 0.0,
AIR_TEMPERATURE = 0.0,
RELATIVE_HUMIDITY = 0.0,
SURFACE_PRESSURE = 0.0,
LONGWAVE_RADIATION = 0.0,
SHORTWAVE_RADIATION = 0.0,
HEATING_LONGWAVE_PERCTAGE_IN_HEATFLUX = 0.78,
HEATING_LONGWAVE_LENGTHSCALE_IN_HEATFLUX = 1.4,
HEATING_SHORTWAVE_LENGTHSCALE_IN_HEATFLUX = 6.3
/
&NML_PHYSICS
HORIZONTAL_MIXING_TYPE = 'closure' ,
HORIZONTAL_MIXING_FILE = 'none' ,
HORIZONTAL_MIXING_KIND = 'constant' ,
HORIZONTAL_MIXING_COEFFICIENT = 0.2000000 ,
HORIZONTAL_PRANDTL_NUMBER = 1.00000000 ,
VERTICAL_MIXING_TYPE = 'closure' ,
VERTICAL_MIXING_COEFFICIENT = 1.0000E-04 ,
VERTICAL_PRANDTL_NUMBER = 1.000000 ,
BOTTOM_ROUGHNESS_TYPE = 'orig' ,
BOTTOM_ROUGHNESS_KIND = 'constant' ,
BOTTOM_ROUGHNESS_FILE = 'none' ,
BOTTOM_ROUGHNESS_LENGTHSCALE = 0.001 ,
BOTTOM_ROUGHNESS_MINIMUM = 0.0025 ,
CONVECTIVE_OVERTURNING = F,
SCALAR_POSITIVITY_CONTROL = T,
BAROTROPIC = F,
BAROCLINIC_PRESSURE_GRADIENT = 'sigma levels' ,
SEA_WATER_DENSITY_FUNCTION = 'dens2' ,
RECALCULATE_RHO_MEAN = F,
INTERVAL_RHO_MEAN = 'seconds= 1800.0' ,
TEMPERATURE_ACTIVE = T,
SALINITY_ACTIVE = T,
SURFACE_WAVE_MIXING = F,
WETTING_DRYING_ON = T,
ADCOR_ON = F
/
&NML_RIVER_TYPE
RIVER_NUMBER = 0,
RIVER_TS_SETTING = 'specified'
RIVER_INFLOW_LOCATION = 'edge'
RIVER_INFO_FILE = 'RIVERS_NAMELIST.nml'
RIVER_KIND = 'variable',
/
&NML_OPEN_BOUNDARY_CONTROL
OBC_ON = T,
OBC_NODE_LIST_FILE = 'tst_obc.dat' ,
OBC_ELEVATION_FORCING_ON = T,
OBC_ELEVATION_FILE = 'm2_only_1m.nc' ,
OBC_TS_TYPE = 3,
OBC_TEMP_NUDGING = F,
OBC_TEMP_FILE = 'none' ,
OBC_TEMP_NUDGING_TIMESCALE = 0.0000000E+00,
OBC_SALT_NUDGING = F,
OBC_SALT_FILE = 'none' ,
OBC_SALT_NUDGING_TIMESCALE = 0.0000000E+00,
OBC_MEANFLOW = F,
OBC_MEANFLOW_FILE = 'none' ,
OBC_LONGSHORE_FLOW_ON = F,
OBC_LONGSHORE_FLOW_FILE = 'none'
/
&NML_GRID_COORDINATES
GRID_FILE = tst_grd.dat ,
GRID_FILE_UNITS = 'meters' ,
PROJECTION_REFERENCE = 'proj=tmerc +datum=NAD83 +lon_0=-70d10 lat_0=42d50 k=.9999666666666667 x_0=900000 y_0=0'
SIGMA_LEVELS_FILE = 'sigma.dat' ,
DEPTH_FILE = 'tst_dep.dat' ,
CORIOLIS_FILE = 'tst_cor.dat' ,
SPONGE_FILE = 'tst_spg.dat'
/
&NML_GROUNDWATER
GROUNDWATER_ON = F,
GROUNDWATER_TEMP_ON = F,
GROUNDWATER_SALT_ON = F,
GROUNDWATER_KIND = 'none' ,
GROUNDWATER_FILE = 'none' ,
GROUNDWATER_FLOW = 0.0000000E+00,
GROUNDWATER_TEMP = 0.0000000E+00,
GROUNDWATER_SALT = 0.0000000E+00
/
&NML_LAG
LAG_PARTICLES_ON = F,
LAG_START_FILE = 'none' ,
LAG_OUT_FILE = 'none' ,
LAG_FIRST_OUT = 'none' ,
LAG_RESTART_FILE = 'none' ,
LAG_OUT_INTERVAL = 'none' ,
LAG_SCAL_CHOICE = 'none'
/
&NML_ADDITIONAL_MODELS
DATA_ASSIMILATION = F,
DATA_ASSIMILATION_FILE = 'none' ,
BIOLOGICAL_MODEL = F,
STARTUP_BIO_TYPE = 'observed'
SEDIMENT_MODEL = F,
SEDIMENT_MODEL_FILE = 'none' ,
ICING_MODEL = F,
ICING_FORCING_FILE = 'wrf_for.nc' ,
ICING_FORCING_KIND = 'variable' ,
ICING_AIR_TEMP = 0.0000000E+00,
ICING_WSPD = 0.0000000E+00,
ICE_MODEL = F,
ICE_FORCING_FILE = 'none' ,
ICE_FORCING_KIND = 'none' ,
ICE_SEA_LEVEL_PRESSURE = 0.0000000E+00,
ICE_AIR_TEMP = 0.0000000E+00,
ICE_SPEC_HUMIDITY = 0.0000000E+00,
ICE_SHORTWAVE = 0.0000000E+00,
ICE_CLOUD_COVER = 0.0000000E+00
/
&NML_PROBES
PROBES_ON = F,
PROBES_NUMBER = 0,
PROBES_FILE = 'none'
/
&NML_STATION_TIMESERIES
OUT_STATION_TIMESERIES_ON = F,
STATION_FILE = 'none' ,
LOCATION_TYPE = 'node',
OUT_ELEVATION = F,
OUT_VELOCITY_3D = F,
OUT_VELOCITY_2D = F,
OUT_WIND_VELOCITY = F,
OUT_SALT_TEMP = F,
OUT_INTERVAL = 'days= 0.0'
/
&NML_NCNEST
NCNEST_ON = F,
NCNEST_BLOCKSIZE = -1,
NCNEST_NODE_FILES = 'none'
/
&NML_NESTING
NESTING_ON = F,
NESTING_BLOCKSIZE = 120,
NESTING_FILE_NAME = 'node_nest.nc'
/
&NML_BOUNDSCHK
BOUNDSCHK_ON = F,
CHK_INTERVAL = 0,
VELOC_MAG_MAX = 0.0000000E+00,
ZETA_MAG_MAX = 0.0000000E+00,
TEMP_MAX = 0.0000000E+00,
TEMP_MIN = 0.0000000E+00,
SALT_MAX = 0.0000000E+00,
SALT_MIN = 0.0000000E+00
/
!================================================================!
_______ _ _ _______ _______ _______ ______ _____
(_______)(_) (_)(_______)(_______)(_______)(_____ \ (_____)
_____ _ _ _ _ _ _ _ _ _____) ) _ __ _
| ___) | | | || | | | | || ||_|| |(_____ ( | |/ /| |
| | \ \ / / | |_____ | |___| || | | | _____) )_| /_| |
|_| \___/ \______) \_____/ |_| |_|(______/(_)\_____/
-- Beta Release
!================================================================!
! !
!========DOMAIN DECOMPOSITION USING: METIS 4.0.1 ================!
!======Copyright 1998, Regents of University of Minnesota========!
! !
&NML_CASE
CASE_TITLE = 'IDEAL ESTUARY CASE'
TIMEZONE = 'UTC',
DATE_FORMAT = 'YMD'
DATE_REFERENCE = 'default',
START_DATE = '2013-04-01 00:00:00'
END_DATE = '2013-04-30 00:00:00'
/
&NML_STARTUP
STARTUP_TYPE = 'coldstart' ,
STARTUP_FILE = 'none' ,
STARTUP_UV_TYPE = 'default' ,
STARTUP_TURB_TYPE = 'default' ,
STARTUP_TS_TYPE = 'constant' ,
STARTUP_T_VALS = 15.0 ,
STARTUP_S_VALS = 35.0 ,
STARTUP_U_VALS = 0.0,
STARTUP_V_VALS = 0.0,
STARTUP_DMAX = -10.00000
/
&NML_IO
INPUT_DIR = './tstinp' ,
OUTPUT_DIR = './output' ,
IREPORT = 40,
VISIT_ALL_VARS = F,
WAIT_FOR_VISIT = F,
USE_MPI_IO_MODE = F
/
&NML_INTEGRATION
EXTSTEP_SECONDS = 5.00 ,
ISPLIT = 10,
IRAMP = 500 ,
MIN_DEPTH = 0.05000000E+00,
STATIC_SSH_ADJ = 0.0000000E+00
/
&NML_RESTART
RST_ON = F,
RST_FIRST_OUT = '2013-04-01 00:00:00' ,
RST_OUT_INTERVAL = 'seconds=3600' ,
RST_OUTPUT_STACK = 0
/
&NML_NETCDF
NC_ON = T,
NC_FIRST_OUT = '2013-04-01 00:00:00',
NC_OUT_INTERVAL = 'seconds=3600.' ,
NC_OUTPUT_STACK = 0,
NC_GRID_METRICS = T,
NC_FILE_DATE = T,
NC_VELOCITY = T,
NC_SALT_TEMP = T,
NC_TURBULENCE = T,
NC_AVERAGE_VEL = T,
NC_VERTICAL_VEL = T,
NC_WIND_VEL = F,
NC_WIND_STRESS = F,
NC_EVAP_PRECIP = F,
NC_SURFACE_HEAT = F,
NC_GROUNDWATER = F
/
&NML_NETCDF_AV
NCAV_ON = F,
NCAV_FIRST_OUT = 'none' ,
NCAV_OUT_INTERVAL = 'none' ,
NCAV_OUTPUT_STACK = 0,
NCAV_SUBDOMAIN_FILES = ,
NCAV_GRID_METRICS = F,
NCAV_FILE_DATE = F,
NCAV_VELOCITY = F,
NCAV_SALT_TEMP = F,
NCAV_TURBULENCE = F,
NCAV_AVERAGE_VEL = F,
NCAV_VERTICAL_VEL = F,
NCAV_WIND_VEL = F,
NCAV_WIND_STRESS = F,
NCAV_EVAP_PRECIP = F,
NCAV_SURFACE_HEAT = F,
NCAV_GROUNDWATER = F,
NCAV_BIO = F,
NCAV_WQM = F,
NCAV_VORTICITY = F
/
&NML_SURFACE_FORCING
wIND_ON = T,
WIND_TYPE = 'speed' ,
WIND_FILE = 'tst_wnd.nc' ,
WIND_KIND = 'variable' ,
WIND_X = 0.0000000E+00,
WIND_Y = 0.0000000E+00,
HEATING_ON = F,
HEATING_TYPE = 'flux' ,
HEATING_KIND = 'variable' ,
HEATING_FILE = 'tst_wnd.nc' ,
HEATING_LONGWAVE_LENGTHSCALE = 6.3 ,
HEATING_LONGWAVE_PERCTAGE = 0.78000000 ,
HEATING_SHORTWAVE_LENGTHSCALE = 1.4000000 ,
HEATING_RADIATION = 0.0000000E+00,
HEATING_NETFLUX = 0.0000000E+00,
PRECIPITATION_ON = F,
PRECIPITATION_KIND = 'variable' ,
PRECIPITATION_FILE = 'wrf_for.nc' ,
PRECIPITATION_PRC = 0.0000000E+00,
PRECIPITATION_EVP = 0.0000000E+00,
AIRPRESSURE_ON = T,
AIRPRESSURE_KIND = 'variable' ,
AIRPRESSURE_FILE = 'tst_wnd.nc' ,
AIRPRESSURE_VALUE = 0.0000000E+00
/
&NML_HEATING_CALCULATED
HEATING_CALCULATE_ON = T,
HEATING_CALCULATE_TYPE = 'flux',
HEATING_CALCULATE_FILE = tst_wnd.nc,
HEATING_CALCULATE_KIND = variable,
ZUU = 10.0,
ZTT = 1.5,
ZQQ = 0.0,
AIR_TEMPERATURE = 0.0,
RELATIVE_HUMIDITY = 0.0,
SURFACE_PRESSURE = 0.0,
LONGWAVE_RADIATION = 0.0,
SHORTWAVE_RADIATION = 0.0,
HEATING_LONGWAVE_PERCTAGE_IN_HEATFLUX = 0.4,
HEATING_LONGWAVE_LENGTHSCALE_IN_HEATFLUX = 5,
HEATING_SHORTWAVE_LENGTHSCALE_IN_HEATFLUX = 20
/
&NML_PHYSICS
HORIZONTAL_MIXING_TYPE = 'closure' ,
HORIZONTAL_MIXING_FILE = 'none' ,
HORIZONTAL_MIXING_KIND = 'constant' ,
HORIZONTAL_MIXING_COEFFICIENT = 0.2000000 ,
HORIZONTAL_PRANDTL_NUMBER = 1.00000000 ,
VERTICAL_MIXING_TYPE = 'closure' ,
VERTICAL_MIXING_COEFFICIENT = 1.0000E-04 ,
VERTICAL_PRANDTL_NUMBER = 1.000000 ,
BOTTOM_ROUGHNESS_TYPE = 'orig' ,
BOTTOM_ROUGHNESS_KIND = 'constant' ,
BOTTOM_ROUGHNESS_FILE = 'none' ,
BOTTOM_ROUGHNESS_LENGTHSCALE = 0.001 ,
BOTTOM_ROUGHNESS_MINIMUM = 0.0025 ,
CONVECTIVE_OVERTURNING = F,
SCALAR_POSITIVITY_CONTROL = T,
BAROTROPIC = F,
BAROCLINIC_PRESSURE_GRADIENT = 'sigma levels' ,
SEA_WATER_DENSITY_FUNCTION = 'dens2' ,
RECALCULATE_RHO_MEAN = F,
INTERVAL_RHO_MEAN = 'seconds= 1800.0' ,
TEMPERATURE_ACTIVE = T,
SALINITY_ACTIVE = T,
SURFACE_WAVE_MIXING = F,
WETTING_DRYING_ON = T,
ADCOR_ON = F
/
&NML_RIVER_TYPE
RIVER_NUMBER = 0,
RIVER_TS_SETTING = 'specified'
RIVER_INFLOW_LOCATION = 'edge'
RIVER_INFO_FILE = 'RIVERS_NAMELIST.nml'
RIVER_KIND = 'variable',
/
&NML_OPEN_BOUNDARY_CONTROL
OBC_ON = T,
OBC_NODE_LIST_FILE = 'tst_obc.dat' ,
OBC_ELEVATION_FORCING_ON = T,
OBC_ELEVATION_FILE = 'm2_only_1m.nc' ,
OBC_TS_TYPE = 3,
OBC_TEMP_NUDGING = F,
OBC_TEMP_FILE = 'none' ,
OBC_TEMP_NUDGING_TIMESCALE = 0.0000000E+00,
OBC_SALT_NUDGING = F,
OBC_SALT_FILE = 'none' ,
OBC_SALT_NUDGING_TIMESCALE = 0.0000000E+00,
OBC_MEANFLOW = F,
OBC_MEANFLOW_FILE = 'none' ,
OBC_LONGSHORE_FLOW_ON = F,
OBC_LONGSHORE_FLOW_FILE = 'none'
/
&NML_GRID_COORDINATES
GRID_FILE = tst_grd.dat ,
GRID_FILE_UNITS = 'meters' ,
PROJECTION_REFERENCE = 'proj=tmerc +datum=NAD83 +lon_0=-70d10 lat_0=42d50 k=.9999666666666667 x_0=900000 y_0=0'
SIGMA_LEVELS_FILE = 'sigma.dat' ,
DEPTH_FILE = 'tst_dep.dat' ,
CORIOLIS_FILE = 'tst_cor.dat' ,
SPONGE_FILE = 'tst_spg.dat'
/
&NML_GROUNDWATER
GROUNDWATER_ON = F,
GROUNDWATER_TEMP_ON = F,
GROUNDWATER_SALT_ON = F,
GROUNDWATER_KIND = 'none' ,
GROUNDWATER_FILE = 'none' ,
GROUNDWATER_FLOW = 0.0000000E+00,
GROUNDWATER_TEMP = 0.0000000E+00,
GROUNDWATER_SALT = 0.0000000E+00
/
&NML_LAG
LAG_PARTICLES_ON = F,
LAG_START_FILE = 'none' ,
LAG_OUT_FILE = 'none' ,
LAG_FIRST_OUT = 'none' ,
LAG_RESTART_FILE = 'none' ,
LAG_OUT_INTERVAL = 'none' ,
LAG_SCAL_CHOICE = 'none'
/
&NML_ADDITIONAL_MODELS
DATA_ASSIMILATION = F,
DATA_ASSIMILATION_FILE = 'none' ,
BIOLOGICAL_MODEL = F,
STARTUP_BIO_TYPE = 'observed'
SEDIMENT_MODEL = F,
SEDIMENT_MODEL_FILE = 'none' ,
ICING_MODEL = F,
ICING_FORCING_FILE = 'wrf_for.nc' ,
ICING_FORCING_KIND = 'variable' ,
ICING_AIR_TEMP = 0.0000000E+00,
ICING_WSPD = 0.0000000E+00,
ICE_MODEL = F,
ICE_FORCING_FILE = 'none' ,
ICE_FORCING_KIND = 'none' ,
ICE_SEA_LEVEL_PRESSURE = 0.0000000E+00,
ICE_AIR_TEMP = 0.0000000E+00,
ICE_SPEC_HUMIDITY = 0.0000000E+00,
ICE_SHORTWAVE = 0.0000000E+00,
ICE_CLOUD_COVER = 0.0000000E+00
/
&NML_PROBES
PROBES_ON = F,
PROBES_NUMBER = 0,
PROBES_FILE = 'none'
/
&NML_STATION_TIMESERIES
OUT_STATION_TIMESERIES_ON = F,
STATION_FILE = 'none' ,
LOCATION_TYPE = 'node',
OUT_ELEVATION = F,
OUT_VELOCITY_3D = F,
OUT_VELOCITY_2D = F,
OUT_WIND_VELOCITY = F,
OUT_SALT_TEMP = F,
OUT_INTERVAL = 'days= 0.0'
/
&NML_NCNEST
NCNEST_ON = F,
NCNEST_BLOCKSIZE = -1,
NCNEST_NODE_FILES = 'none'
/
&NML_NESTING
NESTING_ON = F,
NESTING_BLOCKSIZE = 120,
NESTING_FILE_NAME = 'node_nest.nc'
/
&NML_BOUNDSCHK
BOUNDSCHK_ON = F,
CHK_INTERVAL = 0,
VELOC_MAG_MAX = 0.0000000E+00,
ZETA_MAG_MAX = 0.0000000E+00,
TEMP_MAX = 0.0000000E+00,
TEMP_MIN = 0.0000000E+00,
SALT_MAX = 0.0000000E+00,
SALT_MIN = 0.0000000E+00
/
!================================================================!
_______ _ _ _______ _______ _______ ______ _____
(_______)(_) (_)(_______)(_______)(_______)(_____ \ (_____)
_____ _ _ _ _ _ _ _ _ _____) ) _ __ _
| ___) | | | || | | | | || ||_|| |(_____ ( | |/ /| |
| | \ \ / / | |_____ | |___| || | | | _____) )_| /_| |
|_| \___/ \______) \_____/ |_| |_|(______/(_)\_____/
-- Beta Release
!================================================================!
! !
!========DOMAIN DECOMPOSITION USING: METIS 4.0.1 ================!
!======Copyright 1998, Regents of University of Minnesota========!
! !
&NML_CASE
CASE_TITLE = 'IDEAL ESTUARY CASE'
TIMEZONE = 'UTC',
DATE_FORMAT = 'YMD'
DATE_REFERENCE = 'default',
START_DATE = '2013-04-01 00:00:00'
END_DATE = '2013-04-30 00:00:00'
/
&NML_STARTUP
STARTUP_TYPE = 'coldstart' ,
STARTUP_FILE = 'none' ,
STARTUP_UV_TYPE = 'default' ,
STARTUP_TURB_TYPE = 'default' ,
STARTUP_TS_TYPE = 'constant' ,
STARTUP_T_VALS = 15.0 ,
STARTUP_S_VALS = 35.0 ,
STARTUP_U_VALS = 0.0,
STARTUP_V_VALS = 0.0,
STARTUP_DMAX = -10.00000
/
&NML_IO
INPUT_DIR = './tstinp' ,
OUTPUT_DIR = './output' ,
IREPORT = 40,
VISIT_ALL_VARS = F,
WAIT_FOR_VISIT = F,
USE_MPI_IO_MODE = F
/
&NML_INTEGRATION
EXTSTEP_SECONDS = 5.00 ,
ISPLIT = 10,
IRAMP = 500 ,
MIN_DEPTH = 0.05000000E+00,
STATIC_SSH_ADJ = 0.0000000E+00
/
&NML_RESTART
RST_ON = F,
RST_FIRST_OUT = '2013-04-01 00:00:00' ,
RST_OUT_INTERVAL = 'seconds=3600' ,
RST_OUTPUT_STACK = 0
/
&NML_NETCDF